I have noticed two small problems with trees/patches in my backyard.
1. I poisoned a tree and when I try to clear it I get the message that I'm already clearing it. This persisted through one RL day now but I guess a server restart might reset that flag.
2. Restoring a depleted patch doesn't result in a "Finished"-Window at 100%. Instead the last operation (e. g. watering) is animated until I close the "Patch"-window with the red x. Then there is the message "spirit not found" at the bottom of the screen and the watering sound is still playing. The patch nonetheless is restored and can be tended. Found this on both occasions when I had the patch restore project.